Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu8126Putative phage tail protein I. (221 aa)    
Predicted Functional Partners:
Atu0457
Conserved hypothetical protein.
 
 
 0.994
Atu8128
Putative bacteriophage P2 tail protein.
 
 
 0.986
Atu0460
Conserved hypothetical protein.
 
 
 0.983
Atu0461
Conserved hypothetical protein.
 
  
 0.970
Atu0454
Hypothetical protein.
  
  
 0.944
Atu8147
Conserved hypothetical protein.
  
 
 0.878
Atu8141
Conserved hypothetical protein.
 
   0.792
Atu8127
Conserved hypothetical protein.
       0.791
Atu8140
Conserved hypothetical protein.
  
    0.563
Atu0453
Hypothetical protein.
       0.534
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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