STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8126Putative phage tail protein I. (221 aa)    
Predicted Functional Partners:
Atu8128
Putative bacteriophage P2 tail protein.
 
 
 0.975
Atu0460
Conserved hypothetical protein.
 
 
 0.974
Atu0457
Conserved hypothetical protein.
 
 
 0.972
Atu0461
Conserved hypothetical protein.
 
  
 0.958
Atu0454
Hypothetical protein.
  
  
 0.916
Atu8127
Conserved hypothetical protein.
       0.781
Atu8140
Conserved hypothetical protein.
  
    0.528
Atu0453
Hypothetical protein.
       0.514
Atu3854
Conserved hypothetical protein.
  
     0.464
Atu8141
Conserved hypothetical protein.
 
    0.440
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.