STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8140Conserved hypothetical protein. (217 aa)    
Predicted Functional Partners:
Atu8141
Conserved hypothetical protein.
 
  
 0.770
Atu0953
Conserved hypothetical protein.
       0.758
Atu3704
Conserved hypothetical protein.
  
     0.672
Atu0461
Conserved hypothetical protein.
  
  
 0.654
Atu0457
Conserved hypothetical protein.
  
  
 0.604
Atu0460
Conserved hypothetical protein.
  
    0.590
Atu8128
Putative bacteriophage P2 tail protein.
  
  
 0.589
Atu8126
Putative phage tail protein I.
  
    0.563
Atu0933
Beta-lactamase class D.
  
   
 0.521
gp34
Phage head portal protein.
 
   
 0.481
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.