STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8147Conserved hypothetical protein. (674 aa)    
Predicted Functional Partners:
Atu0457
Conserved hypothetical protein.
  
 
 0.938
Atu0232
Conserved hypothetical protein; Belongs to the UPF0339 family.
  
   0.918
Atu8126
Putative phage tail protein I.
  
 
 0.878
Atu1710
Conserved hypothetical protein.
  
    0.872
Atu0461
Conserved hypothetical protein.
  
   0.842
Atu2463
Conserved hypothetical protein.
  
    0.719
Atu0454
Hypothetical protein.
   
   0.679
Atu8141
Conserved hypothetical protein.
   
   0.679
Atu8167
Putative transmembrane protein.
 
     0.648
Atu1700
Lipoprotein.
 
   
 0.645
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.