STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8174Conserved hypothetical protein. (281 aa)    
Predicted Functional Partners:
Atu2220
Conserved hypothetical protein.
 
   
 0.868
Atu2221
Lipid A biosynthesis protein.
 
     0.830
Atu2222
Dolichol-phosphate mannosyltransferase.
 
    0.801
Atu3557
Conserved hypothetical protein.
 
     0.517
mcpA-4
Methyl-accepting chemotaxis protein.
       0.464
Atu1366
Hypothetical protein.
  
     0.454
Atu3553
Hypothetical protein.
  
     0.452
Atu1360
Conserved hypothetical protein.
  
     0.444
Atu8156
Conserved hypothetical protein.
  
    0.419
Atu8042
Conserved hypothetical protein.
  
     0.410
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.