STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8175Putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif). (936 aa)    
Predicted Functional Partners:
Atu2254
Conserved hypothetical protein.
 
    0.974
Atu2257
Conserved hypothetical protein.
 
     0.973
moxR
MoxR family protein.
 
     0.941
Atu3602
Conserved hypothetical protein.
  
    0.779
Atu0318
Conserved hypothetical protein.
   
 
 0.756
Atu2252
Conserved hypothetical protein.
 
     0.727
Atu0361
Transcriptional regulator.
  
     0.704
Atu3757
Conserved hypothetical protein.
  
     0.697
Atu1373
Conserved hypothetical protein.
  
     0.684
Atu0635
Hypothetical protein.
  
     0.677
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.