STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8175Putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif). (936 aa)    
Predicted Functional Partners:
Atu2254
Conserved hypothetical protein.
 
    0.954
Atu2257
Conserved hypothetical protein.
 
     0.953
moxR
MoxR family protein.
 
     0.864
Atu0318
Conserved hypothetical protein.
   
 
 0.818
Atu3602
Conserved hypothetical protein.
  
    0.777
Atu0361
Transcriptional regulator.
  
   
 0.708
Atu2252
Conserved hypothetical protein.
 
     0.700
Atu3757
Conserved hypothetical protein.
  
   
 0.697
Atu1373
Conserved hypothetical protein.
  
     0.684
Atu0635
Hypothetical protein.
  
     0.677
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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