Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu8177Conserved hypothetical protein. (117 aa)    
Predicted Functional Partners:
Atu2422
ABC transporter, substrate binding protein (amino acid).
 
     0.801
Atu2425
ABC transporter, nucleotide binding/ATPase protein.
 
     0.711
Atu2426
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
     0.707
Atu0898
Conserved hypothetical protein.
  
     0.646
Atu4026
Conserved hypothetical protein.
  
     0.602
livH
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.594
Atu2424
ABC transporter, nucleotide binding/ATPase protein.
 
     0.588
Atu1838
ABC transporter, substrate binding protein (amino acid).
  
     0.563
lipA
lipA protein.
  
     0.470
Atu4714
Conserved hypothetical protein.
  
     0.463
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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