STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu8188Conserved hypothetical protein. (423 aa)    
Predicted Functional Partners:
Atu3523
Polysaccharide biosynthesis associated protein.
  
 0.907
Atu1055
Conserved hypothetical protein.
  
     0.761
Atu0652
Conserved hypothetical protein.
  
     0.758
Atu3777
Conserved hypothetical protein.
 
     0.751
Atu1351
Conserved hypothetical protein.
  
     0.747
Atu2052
Conserved hypothetical protein.
  
     0.730
Atu2246
Conserved hypothetical protein.
  
     0.725
Atu8160
Conserved hypothetical protein.
  
     0.707
Atu1089
Conserved hypothetical protein.
  
     0.705
Atu1773
Conserved hypothetical protein.
  
     0.701
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.