STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LPBF_06235Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (115 aa)    
Predicted Functional Partners:
tatC
Unannotated protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
       0.836
LPBF_06225
Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.836
LPBF_10895
Unannotated protein.
 
     0.797
GCA_001831475_01253
Unannotated protein.
  
 
 0.651
LPBF_06240
Unannotated protein.
       0.615
LPBF_06220
Unannotated protein.
       0.599
LPBF_08465
Unannotated protein.
  
 
 0.598
LPBF_08460
Unannotated protein.
  
 
 0.593
icmF
Unannotated protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.568
LPBF_06245
Unannotated protein.
       0.525
Your Current Organism:
Flavobacterium crassostreae
NCBI taxonomy Id: 1763534
Other names: F. crassostreae, Flavobacterium crassostreae Choi et al. 2017, Flavobacterium sp. LPB0076, JCM 31219, KACC 18706, strain LPB0076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.