STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LPBF_11180Unannotated protein. (141 aa)    
Predicted Functional Partners:
GCA_001831475_01470
Unannotated protein.
       0.661
LPBF_11185
Unannotated protein.
       0.523
LPBF_01215
Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.523
LPBF_11160
Unannotated protein.
  
    0.479
LPBF_11165
Unannotated protein.
       0.474
LPBF_11170
Unannotated protein.
       0.474
LPBF_11175
Unannotated protein.
       0.474
LPBF_11190
Unannotated protein.
       0.469
LPBF_03295
Unannotated protein.
  
     0.442
LPBF_03300
Unannotated protein.
  
     0.434
Your Current Organism:
Flavobacterium crassostreae
NCBI taxonomy Id: 1763534
Other names: F. crassostreae, Flavobacterium crassostreae Choi et al. 2017, Flavobacterium sp. LPB0076, JCM 31219, KACC 18706, strain LPB0076
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.