A3770_04p27980 protein (Chloropicon primus) - STRING interaction network

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Score

A3770_04p27980

Starch-binding protein. (360 aa)

Predicted Functional Partners:

A3770_05p35820

0.708

A3770_12p66980

0.708

A3770_01p02320

0.651

A3770_03p25030

0.651

A3770_03p26100

0.651

A3770_04p28100

0.651

A3770_05p39130

0.651

A3770_09p55110

0.651

A3770_09p55290

0.651

A3770_09p57210

0.651

Your Current Organism:

Chloropicon primus

NCBI taxonomy Id: 1764295
Other names: C. primus, Chlorophyta sp. CCMP1205, Chloropicon primus Lopes dos Santos & Eikrem, 2017, Coccoid green alga CCMP1205, Prasino-clade-7_X-A2 sp. RCC717, Prasino-clade-7_X-A3 sp. RCC1019, Prasino-clade-7_X-A3 sp. RCC1032, Prasino-clade-7_X-A3 sp. RCC1043, Prasinophyceae sp. CCMP1205, Prasinophyceae sp. RCC1019 (clade 7X-A3), Prasinophyceae sp. RCC1032 (clade 7X-A3), Prasinophyceae sp. RCC1032 (clade VIIA), Prasinophyceae sp. RCC1043 (clade 7X-A3), Prasinophyceae sp. RCC717 (clade 7X-A2), coccoid chlorophyte sp. CCMP1205, coccoid prasinophyte sp. CCMP1205, prasinophyte sp. CCMP1205, prasinophyte sp. NIES-3671, prasinophyte sp. NIES-3671 (clade VIIA3), prasinophyte sp. RCC1019, prasinophyte sp. RCC1019 (clade VIIA3), prasinophyte sp. RCC1032, prasinophyte sp. RCC1032 (clade VIIA), prasinophyte sp. RCC1032 (clade VIIA3), prasinophyte sp. RCC1043, prasinophyte sp. RCC1043 (clade VIIA3), prasinophyte sp. RCC717, prasinophyte sp. RCC717 (clade VIIA2)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A3770_01p02320	A3770_04p27980	A0A5B8MCE4	A0A5B8MLV3	Pirin; Belongs to the pirin family.	Starch-binding protein.	0.651
A3770_03p25030	A3770_04p27980	A0A5B8MJW3	A0A5B8MLV3	Beta subunit of NAD(P) transhydrogenase.	Starch-binding protein.	0.651
A3770_03p26100	A3770_04p27980	A0A5B8ML45	A0A5B8MLV3	Amino acid permease.	Starch-binding protein.	0.651
A3770_03p26100	A3770_05p39130	A0A5B8ML45	A0A5B8MP77	Amino acid permease.	Amino acid transporter.	0.452
A3770_04p27980	A3770_01p02320	A0A5B8MLV3	A0A5B8MCE4	Starch-binding protein.	Pirin; Belongs to the pirin family.	0.651
A3770_04p27980	A3770_03p25030	A0A5B8MLV3	A0A5B8MJW3	Starch-binding protein.	Beta subunit of NAD(P) transhydrogenase.	0.651
A3770_04p27980	A3770_03p26100	A0A5B8MLV3	A0A5B8ML45	Starch-binding protein.	Amino acid permease.	0.651
A3770_04p27980	A3770_04p28100	A0A5B8MLV3	A0A5B8MLK8	Starch-binding protein.	Family 12 solute carrier protein.	0.651
A3770_04p27980	A3770_05p35820	A0A5B8MLV3	A0A5B8MM15	Starch-binding protein.	Starch synthase III.	0.708
A3770_04p27980	A3770_05p39130	A0A5B8MLV3	A0A5B8MP77	Starch-binding protein.	Amino acid transporter.	0.651
A3770_04p27980	A3770_09p55110	A0A5B8MLV3	A0A5B8MRC4	Starch-binding protein.	Amino acid/polyamine transporter.	0.651
A3770_04p27980	A3770_09p55290	A0A5B8MLV3	A0A5B8MRI2	Starch-binding protein.	Uncharacterized protein.	0.651
A3770_04p27980	A3770_09p57210	A0A5B8MLV3	A0A5B8MRX5	Starch-binding protein.	Phospho-2-dehydro-3-deoxyheptonate aldolase.	0.651
A3770_04p27980	A3770_12p66980	A0A5B8MLV3	A0A5B8MXH5	Starch-binding protein.	Starch synthase.	0.708
A3770_04p28100	A3770_04p27980	A0A5B8MLK8	A0A5B8MLV3	Family 12 solute carrier protein.	Starch-binding protein.	0.651
A3770_05p35820	A3770_04p27980	A0A5B8MM15	A0A5B8MLV3	Starch synthase III.	Starch-binding protein.	0.708
A3770_05p39130	A3770_03p26100	A0A5B8MP77	A0A5B8ML45	Amino acid transporter.	Amino acid permease.	0.452
A3770_05p39130	A3770_04p27980	A0A5B8MP77	A0A5B8MLV3	Amino acid transporter.	Starch-binding protein.	0.651
A3770_09p55110	A3770_04p27980	A0A5B8MRC4	A0A5B8MLV3	Amino acid/polyamine transporter.	Starch-binding protein.	0.651
A3770_09p55290	A3770_04p27980	A0A5B8MRI2	A0A5B8MLV3	Uncharacterized protein.	Starch-binding protein.	0.651

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Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.889

expected number of edges:

31

PPI enrichment p-value:

0.0707

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045944

Positive regulation of transcription by RNA polymerase II

4 of 95

1.72

1.65

0.00023

GO:0000122

Negative regulation of transcription by RNA polymerase II

3 of 40

1.97

1.57

0.00075

GO:0048522

Positive regulation of cellular process

6 of 376

1.3

1.33

0.00011

GO:0006355

Regulation of transcription, DNA-templated

7 of 486

1.25

1.31

7.51e-05

GO:0000082

G1/S transition of mitotic cell cycle

2 of 12

2.31

1.23

0.0051

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000978

RNA polymerase II cis-regulatory region sequence-specific DNA binding

4 of 56

1.95

1.86

0.00016

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

4 of 144

1.54

1.3

0.0010

GO:0004693

Cyclin-dependent protein serine/threonine kinase activity

2 of 14

2.25

1.11

0.0086

GO:0003676

Nucleic acid binding

6 of 1330

0.75

0.47

0.0224

GO:1901363

Heterocyclic compound binding

8 of 2646

0.57

0.38

0.0185

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:10239

Mixed, incl. CCAAT-binding factor complex, and Transcription factor GATA

3 of 12

2.49

1.89

0.00031

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-983231

Factors involved in megakaryocyte development and platelet production

3 of 54

1.84

1.01

0.0103

MAP-69017

CDK-mediated phosphorylation and removal of Cdc6

2 of 16

2.19

0.76

0.0401

MAP-69202

Cyclin E associated events during G1/S transition

2 of 19

2.12

0.75

0.0401

MAP-69052

Switching of origins to a post-replicative state

2 of 25

2.0

0.75

0.0401

MAP-109582

Hemostasis

3 of 110

1.53

0.69

0.0401

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000785

Chromatin

4 of 158

1.5

1.01

0.0058

GOCC:0043232

Intracellular non-membrane-bounded organelle

6 of 1041

0.85

0.49

0.0323

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR013088

Zinc finger, NHR/GATA-type

3 of 9

2.62

1.97

0.00023

IPR000679

Zinc finger, GATA-type

3 of 10

2.57

1.97

0.00023

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00401

Zinc finger binding to DNA consensus sequence [AT]GATA[AG]

2 of 8

2.49

1.14

0.0082

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