STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATN31_03575Carnitine dehydratase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (376 aa)    
Predicted Functional Partners:
OON94371.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.980
OON95153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.916
OON92925.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.909
OON94375.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.798
OON94370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
OON97193.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.787
OON93333.1
Galactitol-1-phosphate 5-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.710
OON96769.1
Acetolactate synthase, large subunit, biosynthetic type; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.687
OON94374.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.672
OON95571.1
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
   
 
  0.647
Your Current Organism:
Epulopiscium sp. AS2MBin001
NCBI taxonomy Id: 1764958
Other names: E. sp. AS2M-Bin001, Epulopiscium sp. AS2M-Bin001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.