STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ99624.1Polyketide cyclase/dehydrase. (224 aa)    
Predicted Functional Partners:
AKQ99617.1
Transcriptional regulator.
  
  
 0.676
AKQ99621.1
Hydrogenase HycP.
       0.658
AKQ99622.1
Hydrogenase HycQ.
       0.658
AKQ99623.1
Formate hydrogenase HycE.
       0.658
AKQ99618.1
Oxidoreductase.
       0.644
AKQ99619.1
Oxidoreductase.
       0.644
AKQ99620.1
Formate hydrogenlyase HycD.
       0.644
AKR02460.1
Universal stress protein.
  
   
 0.523
AKR01797.1
Universal stress protein.
  
   
 0.514
AKR00791.1
Antibiotic biosynthesis monooxygenase.
  
     0.466
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.