STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ99766.1Hypothetical protein. (492 aa)    
Predicted Functional Partners:
AKQ99765.1
Hypothetical protein.
  
    0.885
AKR02290.1
Hypothetical protein.
  
     0.763
AKR03329.1
anti-sigma-D factor RsdA.
  
     0.761
AKR02514.1
Fluoroquinolones export permease.
  
     0.751
AKR02513.1
Fluoroquinolones export permease.
  
     0.747
AKR00866.1
Acyltransferase papA3.
  
     0.725
AKR02942.1
Hypothetical protein.
 
     0.693
AKR03762.1
Acyltransferase.
  
     0.690
AKQ99990.1
Lipoprotein peptidase LpqM.
  
     0.688
AKR01202.1
Hypothetical protein.
  
     0.679
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.