STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ99824.1Iron complex transporter substrate-binding protein. (263 aa)    
Predicted Functional Partners:
AKQ99823.1
Iron ABC transporter substrate-binding protein.
      0.976
AKR02910.1
FeIII-dicitrate-binding periplasmic lipoprotein.
 
  
 0.867
AKQ99825.1
5-oxoprolinase OplA.
     
 0.847
AKQ99822.1
Allophanate hydrolase.
     
 0.743
AKR02743.1
Mycobactin utilization protein ViuB.
 
  
 0.616
AKQ99820.1
Aminoglycoside 2'-N-acetyltransferase.
       0.593
AKQ99821.1
Allophanate hydrolase.
       0.593
AKR00982.1
Hypothetical protein.
   
    0.521
AKQ99826.1
Nitrate transporter.
       0.496
AKQ99818.1
Transcriptional regulator.
 
   
 0.466
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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