STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ99942.1LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (321 aa)    
Predicted Functional Partners:
AKQ99937.1
Hypothetical protein.
 
     0.881
AKQ99933.1
Hypothetical protein.
 
     0.876
AKQ99940.1
Carbon monoxide dehydrogenase medium subunit.
 
    0.862
AKQ99934.1
Membrane oxidoreductase.
 
     0.832
AKQ99941.1
Xanthine dehydrogenase accessory factor.
       0.785
AKQ99658.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.758
AKR01453.1
Hypothetical protein.
  
  
 0.755
AKR01514.1
Transcriptional regulator.
  
  
 0.745
AKR03669.1
AraC family transcriptional regulator.
  
  
 0.730
AKQ99935.1
Oxidoreductase.
  
  
 0.724
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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