STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR00113.1ATPase. (405 aa)    
Predicted Functional Partners:
AKR00112.1
Cytochrome C biogenesis protein CcsA.
  
    0.771
AKR00109.1
Thioredoxin.
   
   0.747
AKR00111.1
Cytochrome C biogenesis protein ResB.
 
     0.729
AKR00110.1
Cytochrome C biogenesis protein ResC.
       0.678
AKR00108.1
Phosphoglycerate mutase.
       0.652
AKR00107.1
Glutamate-1-semialdehyde 2,1-aminomutase HemL.
       0.642
AKR00115.1
Membrane protein.
     
 0.553
AKR03188.1
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
 
  
 0.516
AKR00510.1
Hypothetical protein.
  
  
 0.490
AKR03828.1
ESX-1 secretion system protein EccD1.
  
  
 0.483
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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