STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR00578.1Oxidoreductase. (288 aa)    
Predicted Functional Partners:
AKR03439.1
Coenzyme F420-dependent oxidoreductase.
 
     0.878
AKR03440.1
DNA-binding protein.
 
   
 0.812
AKR03441.1
Lipid-transfer protein.
 
   
 0.779
AKR02943.1
Hypothetical protein.
  
     0.747
AKR02804.1
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
  
   
 0.684
AKR03442.1
acetyl-CoA acetyltransferase.
 
     0.658
AKR03061.1
Nitroreductase.
  
   
 0.650
AKR01062.1
Oxidoreductase.
  
   
 0.648
AKR03469.1
Deazaflavin-dependent nitroreductase.
  
   
 0.639
AKR00374.1
Hypothetical protein.
  
     0.622
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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