STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR01172.1Multidrug ABC transporter permease. (261 aa)    
Predicted Functional Partners:
AKR01173.1
Spermidine/putrescine ABC transporter ATP-binding protein.
 
  
 0.988
AKR01171.1
Membrane protein.
   
 0.979
AKR01174.1
Membrane protein.
 
   
 0.936
AKR01175.1
Transcriptional regulator.
 
     0.761
AKR01178.1
Fe-S cluster assembly ATPase SufC.
     
 0.730
AKR01179.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
    0.716
AKR01176.1
Fe-S cluster assembly protein SufB.
     
 0.714
AKR01177.1
Fe-S cluster assembly protein SufD.
     
 0.714
AKR01180.1
Nitrogen fixation protein NifU.
       0.712
AKR01181.1
Metal-sulfur cluster biosynthetic enzyme.
       0.712
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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