STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR01446.1Transcriptional regulator. (259 aa)    
Predicted Functional Partners:
AKR01442.1
Cyclase.
    0.950
AKR01441.1
3-hydroxybutyryl-CoA dehydrogenase FadB.
 
    0.921
AKR01444.1
Hypothetical protein.
 
    0.877
AKR01445.1
3-keto-5-aminohexanoate cleavage protein.
 
    0.857
AKR01440.1
Oxidoreductase.
 
    0.850
AKR01443.1
Cupin.
  
    0.735
AKR00074.1
GntR family transcriptional regulator.
 
  
 0.730
AKQ99822.1
Allophanate hydrolase.
 
    0.645
AKQ99821.1
Allophanate hydrolase.
  
    0.569
AKR00177.1
HTH-type transcriptional regulator Mce2R.
 
  
 0.554
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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