STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR01656.1Lipoprotein LppD. (358 aa)    
Predicted Functional Partners:
AKR01657.1
Cyclase.
  
  
 0.800
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
 
 0.695
nnrE
Membrane protein; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
 
 
   0.691
AKR01658.1
cinA-like protein; Belongs to the CinA family.
  
    0.606
AKR01818.1
Polyketide synthase.
  
 
 0.547
AKR00567.1
Transmembrane serine/threonine-protein kinase D PknDb.
 
 
 0.532
AKR00370.1
Hypothetical protein.
  
 
 0.470
AKR00542.1
Antitoxin.
  
 
 0.470
AKR01709.1
Hypothetical protein.
  
 
 0.470
AKR03833.1
ESX-1 secretion-associated protein EspB.
  
 
 0.470
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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