STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR01839.1Class A beta-lactamase. (307 aa)    
Predicted Functional Partners:
AKR01838.1
Hypothetical protein.
       0.770
AKR01138.1
Transpeptidase.
     
 0.730
AKR01840.1
RNA polymerase sigma factor SigC; Belongs to the sigma-70 factor family. ECF subfamily.
       0.584
AKR00538.1
Serine hydrolase.
     
 0.565
AKR00569.1
Periplasmic phosphate-binding lipoprotein PstS2.
     
 0.547
AKR02619.1
Zinc protease; Belongs to the peptidase M16 family.
       0.544
AKR03696.1
Lipoprotein LpqH.
      
 0.529
AKQ99729.1
MCE-associated membrane protein.
     
 0.466
AKR00053.1
Iron-regulated heparin binding hemagglutinin HbhA.
     
 0.444
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.440
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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