STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR02016.1Transmembrane protein. (271 aa)    
Predicted Functional Partners:
AKR01171.1
Membrane protein.
 
 
 0.917
AKR02014.1
Protein tyrosine kinase transcriptional regulator PtkA.
       0.877
AKR02015.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.877
AKR02009.1
Hypothetical protein.
 
     0.817
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.761
AKR01972.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
  
 0.750
AKR02008.1
RNase H.
  
    0.745
AKR02010.1
Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.745
AKR02011.1
Aminotransferase.
       0.745
AKR01978.1
Cytochrome C oxidase subunit II.
 
 
 0.732
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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