STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR02018.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.784
AKR01832.1
Cobalamin biosynthesis protein CobN.
      
 0.730
AKQ99834.1
TetR family transcriptional regulator.
 
   
 0.666
AKR01929.1
UDP-N-acetylmuramate--L-alanine ligase.
      
 0.649
AKR03308.1
Nucleoside hydrolase.
      
 0.640
AKR02933.1
Carbon starvation protein CstA.
      
 0.633
AKR00443.1
Transcriptional regulator.
 
     0.597
AKR01134.1
Transcriptional activator protein.
  
     0.484
AKR01365.1
Hypothetical protein.
  
     0.468
AKR03050.1
Aminoglycoside phosphotransferase.
 
   
 0.421
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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