STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR02474.1Membrane protein. (225 aa)    
Predicted Functional Partners:
AKR01913.1
Lipoprotein LppL.
      
 0.813
AKR02473.1
Hypothetical protein.
       0.773
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
      
 0.606
AKR02471.1
Hypothetical protein.
       0.566
AKR02472.1
PE-PGRS family protein.
       0.566
AKR02475.1
Transmembrane protein DedA.
       0.553
AKR02204.1
Trehalase.
      
 0.546
AKR02470.1
Hypothetical protein.
       0.512
AKR03125.1
Transferase.
  
   
 0.404
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.