STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR02880.1PPE family protein PPE46; Belongs to the mycobacterial PPE family. (437 aa)    
Predicted Functional Partners:
AKR02881.1
PE family protein.
       0.718
AKR02879.1
EsxQ.
  
  
 0.598
AKR02882.1
PPE family protein.
       0.585
AKR02883.1
ESAT-6-like protein EsxR; Belongs to the WXG100 family.
  
  
 0.583
AKR02884.1
Type VII secretion system protein EsxS; Belongs to the WXG100 family.
  
  
 0.546
AKR02886.1
PE family protein.
     
 0.476
AKR01587.1
PE-PGRS family protein PE_PGRS34.
      
 0.461
AKR03817.1
ESX-1 secretion-associated protein EspG1.
  
  
 0.456
AKR03829.1
Putative ESX-1 secretion-associated protein EspJ.
  
  
 0.447
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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