STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR02953.1AraC family transcriptional regulator. (340 aa)    
Predicted Functional Partners:
AKR02954.1
Monooxygenase.
 
   
 0.840
AKQ99723.1
MCE-family protein Mce1B.
      
 0.833
AKR01690.1
Transcriptional regulator.
 
 
 0.809
AKR01393.1
Transcriptional regulator.
  
  
 0.755
AKR00873.1
ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family.
  
  
 0.743
AKR03669.1
AraC family transcriptional regulator.
  
   
0.734
AKR00874.1
Hydrolase.
   
    0.729
AKR01395.1
Transcriptional regulator.
   
  
 0.724
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.715
AKR00195.1
Two-component system transcriptional regulator TcrA.
   
  
 0.713
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.