STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR03149.1TetR family transcriptional regulator. (201 aa)    
Predicted Functional Partners:
AKR03152.1
Transmembrane alkane 1-monooxygenase AlkB.
 
    0.922
AKR03150.1
Rubredoxin RubB; Belongs to the rubredoxin family.
  
  
 0.880
AKR03151.1
Rubredoxin RubA; Belongs to the rubredoxin family.
 
     0.872
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.769
AKR00512.1
Membrane protein.
  
     0.735
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.703
AKR00727.1
Cysteine dioxygenase.
  
     0.666
AKQ99846.1
ESX-3 secretion system protein EccB3.
  
     0.646
AKR00040.1
4-carboxymuconolactone decarboxylase.
 
    0.618
AKR01018.1
Adenylate cyclase.
  
     0.600
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.