STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR03370.1Membrane protein. (561 aa)    
Predicted Functional Partners:
AKR00372.1
ATP-binding protein.
 
      0.900
AKR03584.1
General secretion pathway protein GspE.
      
 0.837
AKR03369.1
Hypothetical protein.
       0.773
AKR03277.1
Transmembrane ABC transporter ATP-binding protein.
      
 0.633
AKR03368.1
Cutinase.
       0.596
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.587
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
    0.558
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
  
    0.549
AKR00129.1
Hypothetical protein.
  
     0.543
AKR02912.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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