STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKR03438.1Acetoacetate decarboxylase. (236 aa)    
Predicted Functional Partners:
AKR03437.1
Cytochrome P450 monooxygenase Cyp142a.
 
   
 0.725
AKR03473.1
CoA-transferase.
     
 0.659
AKR03440.1
DNA-binding protein.
 
   
 0.642
AKR03436.1
Cytochrome P450 monooxygenase Cyp142b.
     
 0.635
AKR00385.1
4-carboxymuconolactone decarboxylase.
  
     0.620
AKR00721.1
Dihydrodipicolinate reductase.
  
     0.595
AKR03328.1
Hypothetical protein.
  
     0.578
AKR00377.1
Ferredoxin.
 
     0.566
AKR03442.1
acetyl-CoA acetyltransferase.
 
   
 0.549
AKR03439.1
Coenzyme F420-dependent oxidoreductase.
     
 0.538
Your Current Organism:
Mycobacterium tuberculosis variant bovis
NCBI taxonomy Id: 1765
Other names: ATCC 19210, CIP 105234, M. tuberculosis variant bovis, Mycobacterium bovis, Mycobacterium bovis subsp. bovis, Mycobacterium tuberculosis typus bovinus, Mycobacterium tuberculosis var. bovis, NCTC 10772
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