STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPG16384.1ATP-dependent protease LonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)    
Predicted Functional Partners:
OPG16456.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.704
OPG16459.1
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.660
OPG16807.1
Spore protease YyaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
clpX
ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
  
 0.591
lon
Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
  
  
0.591
OPG16534.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.582
OPG15953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
OPG16458.1
Stage III sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.551
engB
Hypothetical protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.546
OPG17374.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
Your Current Organism:
Acidibacillus ferrooxidans
NCBI taxonomy Id: 1765683
Other names: A. ferrooxidans, Alicyclobacillaceae bacterium ITV01, Alicyclobacillaceae bacterium SLC40, Firmicutes bacterium BSH1, Firmicutes bacterium MCF99, Gram-positive iron-oxidizing acidophile G1, Gram-positive iron-oxidizing acidophile SLC66, bacterium GS1, strain SLC66
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