STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42563.1IS200/IS605 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
APZ42564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.885
APZ42617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.745
APZ42627.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.745
BW247_05280
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.740
ureC
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.516
APZ42562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.475
APZ44584.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.436
Your Current Organism:
Acidihalobacter ferrooxidans
NCBI taxonomy Id: 1765967
Other names: A. ferrooxidans
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.