APZ43160.1 protein (Acidihalobacter ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APZ43160.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)

Predicted Functional Partners:

APZ43157.1

0.950

APZ43158.1

0.950

APZ43161.1

0.950

APZ43154.1

0.946

APZ43156.1

0.945

APZ44628.1

0.932

APZ43151.1

0.854

APZ43153.1

0.852

APZ43168.1

0.818

APZ43169.1

0.811

Your Current Organism:

Acidihalobacter ferrooxidans

NCBI taxonomy Id: 1765967
Other names: A. ferrooxidans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ43151.1	APZ43153.1	BW247_08655	BW247_08665	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APZ43151.1	APZ43154.1	BW247_08655	BW247_08675	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
APZ43151.1	APZ43156.1	BW247_08655	BW247_08685	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
APZ43151.1	APZ43157.1	BW247_08655	BW247_08690	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
APZ43151.1	APZ43158.1	BW247_08655	BW247_08695	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
APZ43151.1	APZ43160.1	BW247_08655	BW247_08705	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
APZ43151.1	APZ43161.1	BW247_08655	BW247_08710	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
APZ43151.1	APZ43168.1	BW247_08655	BW247_08745	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
APZ43151.1	APZ43169.1	BW247_08655	BW247_08750	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
APZ43151.1	APZ44628.1	BW247_08655	BW247_08670	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
APZ43153.1	APZ43151.1	BW247_08665	BW247_08655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APZ43153.1	APZ43154.1	BW247_08665	BW247_08675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
APZ43153.1	APZ43156.1	BW247_08665	BW247_08685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
APZ43153.1	APZ43157.1	BW247_08665	BW247_08690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
APZ43153.1	APZ43158.1	BW247_08665	BW247_08695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
APZ43153.1	APZ43160.1	BW247_08665	BW247_08705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
APZ43153.1	APZ43161.1	BW247_08665	BW247_08710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
APZ43153.1	APZ43168.1	BW247_08665	BW247_08745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
APZ43153.1	APZ43169.1	BW247_08665	BW247_08750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
APZ43153.1	APZ44628.1	BW247_08665	BW247_08670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899