STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI24148.1Transcriptional regulator, AraC family. (307 aa)    
Predicted Functional Partners:
ALI24149.1
Bifunctional deaminase-reductase domain protein.
 
   
 0.938
ALI24147.1
Arylamine N-acetyltransferase.
  
  
 0.779
ALI24144.1
Long-chain-fatty-acid--CoA ligase.
 
   
 0.717
uspA
UspA.
 
   
 0.620
rpoE_4
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.570
ALI24154.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.563
ALI24146.1
Hypothetical protein.
       0.432
ALI29075.1
Hypothetical protein.
 
 
 0.405
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.401
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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