STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI26143.1Transcriptional regulator, GntR family domain; Aspartate aminotransferase. (479 aa)    
Predicted Functional Partners:
ALI26145.1
Putative integral membrane protein.
 
     0.789
echA17
Enoyl-CoA hydratase.
  
 
 0.648
lutR_2
Transcriptional regulator; GntR family.
 
   
 0.641
ydcR_2
Transcriptional regulator, GntR family.
 
   
 0.625
ecfA2
ABC transporter ATP-binding protein.
       0.558
ALI26144.1
Hypothetical protein.
       0.556
ALI26147.1
Hypothetical protein.
       0.556
pdhR_7
Transcriptional regulator, GntR family.
     
 0.549
rebM_2
Methyltransferase domain.
       0.482
ALI26150.1
Methyltransferase.
       0.466
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.