Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytnP_1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
ALI27752.1
Oxidoreductase; Flavoprotein.
   
 0.496
ALI24548.1
Hypothetical protein.
 
     0.447
ALI27035.1
Hypothetical protein.
  
  
 0.443
ALI27037.1
Hypothetical protein.
       0.425
ALI27064.1
Phage lysin, glycosyl hydrolase.
  
    0.421
ALI27133.1
Hypothetical protein.
 
    0.413
ALI26128.1
Hypothetical protein.
 
     0.411
ALI27945.1
Putative isomerase.
 
 
 0.411
thiF
ThiF.
  
 
 0.400
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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