STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI27964.1Long-chain-fatty-acid--CoA ligase. (513 aa)    
Predicted Functional Partners:
ALI27739.1
Malonyl CoA-acyl carrier protein transacylase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.801
ALI24760.1
Polyketide synthase.
 
 0.711
ALI24203.1
Malonyl CoA-acyl carrier protein transacylase.
 
 0.706
ALI26809.1
Polyketide synthase.
 
 0.706
echA8_13
Hypothetical protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.703
ALI29570.1
Putative polyketide synthase.
 
 0.701
mbtD
MbtD.
 
 0.693
ALI27962.1
Long-chain-fatty-acid--CoA ligase.
 
    
0.676
ALI27963.1
BarH-like protein.
 
    0.666
rplF_1
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.655
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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