STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI28013.12-hydroxy-3-oxopropionate reductase. (262 aa)    
Predicted Functional Partners:
garR_2
2-hydroxy-3-oxopropionate reductase.
 
    
0.903
ALI28011.1
Hypothetical protein.
       0.889
ALI28010.1
3-ketoacyl-CoA thiolase.
  
  
 0.818
fdxD
FdxD.
  
    0.767
ALI28009.1
fdxD-like protein.
  
    0.728
ALI28008.1
Putative FeS oxidoreductase; NADH-quinone oxidoreductase chain F 2.
     
 0.707
ALI28007.1
Hypothetical protein.
       0.662
ALI29516.1
Dehydrogenase, putative.
  
     0.636
bioI_3
Putative cytochrome P450 hydroxylase.
  
  
 0.530
estC
EstC.
       0.491
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.