STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI28576.1Transcriptional regulator, AfsR/DnrI/RedD family. (377 aa)    
Predicted Functional Partners:
ALI25521.1
Hypothetical protein.
  
 0.942
ALI28577.1
Hypothetical protein.
  
    0.782
ALI29258.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
 0.737
ALI26707.1
Hypothetical protein.
  
     0.576
eccD
Putative ESX-1 secretion system.
  
     0.572
ALI23889.1
Serine/threonine-protein kinase PknA.
 
 
 0.571
ALI28574.1
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.563
ALI28575.1
Methyltransferase.
  
    0.562
ALI28573.1
Hypothetical protein.
  
  
 0.544
ALI25027.1
Ribosylnicotinamide kinase.
   
    0.540
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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