Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALI26488.1 | arsC_2 | XA26_26470 | XA26_48460 | SigB-like protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Arsenate reductase; Belongs to the ArsC family. | 0.608 |
ALI26488.1 | prs | XA26_26470 | XA26_48450 | SigB-like protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.435 |
ALI26488.1 | rpoA | XA26_26470 | XA26_15280 | SigB-like protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.979 |
ALI26488.1 | rpoC | XA26_26470 | XA26_13950 | SigB-like protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.981 |
ALI27851.1 | arsC_2 | XA26_40410 | XA26_48460 | Hypothetical protein. | Arsenate reductase; Belongs to the ArsC family. | 0.778 |
ALI28645.1 | ALI28646.1 | XA26_48470 | XA26_48480 | Lipoprotein, putative. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.773 |
ALI28645.1 | arsC_2 | XA26_48470 | XA26_48460 | Lipoprotein, putative. | Arsenate reductase; Belongs to the ArsC family. | 0.773 |
ALI28645.1 | glmU | XA26_48470 | XA26_48440 | Lipoprotein, putative. | N-acetylglucosamine-1-phosphate uridyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.445 |
ALI28645.1 | prs | XA26_48470 | XA26_48450 | Lipoprotein, putative. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.773 |
ALI28646.1 | ALI28645.1 | XA26_48480 | XA26_48470 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Lipoprotein, putative. | 0.773 |
ALI28646.1 | arsC_2 | XA26_48480 | XA26_48460 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Arsenate reductase; Belongs to the ArsC family. | 0.790 |
ALI28646.1 | glmU | XA26_48480 | XA26_48440 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | N-acetylglucosamine-1-phosphate uridyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.517 |
ALI28646.1 | prs | XA26_48480 | XA26_48450 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.830 |
ALI28646.1 | rpoA | XA26_48480 | XA26_15280 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
ALI29778.1 | arsC_2 | XA26_59950 | XA26_48460 | Hypothetical protein. | Arsenate reductase; Belongs to the ArsC family. | 0.778 |
arsC_2 | ALI26488.1 | XA26_48460 | XA26_26470 | Arsenate reductase; Belongs to the ArsC family. | SigB-like protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.608 |
arsC_2 | ALI27851.1 | XA26_48460 | XA26_40410 | Arsenate reductase; Belongs to the ArsC family. | Hypothetical protein. | 0.778 |
arsC_2 | ALI28645.1 | XA26_48460 | XA26_48470 | Arsenate reductase; Belongs to the ArsC family. | Lipoprotein, putative. | 0.773 |
arsC_2 | ALI28646.1 | XA26_48460 | XA26_48480 | Arsenate reductase; Belongs to the ArsC family. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.790 |
arsC_2 | ALI29778.1 | XA26_48460 | XA26_59950 | Arsenate reductase; Belongs to the ArsC family. | Hypothetical protein. | 0.778 |
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