STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI28685.1Putative DNA-binding protein. (279 aa)    
Predicted Functional Partners:
ALI28686.1
Putative oxidoreductase/Short-chain dehydrogenase.
 
     0.872
ALI28684.1
Hypothetical protein.
       0.631
ALI27710.1
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.484
ALI28683.1
Transcriptional regulator, TetR family.
       0.474
ALI28271.1
Hypothetical protein.
  
     0.467
ALI24406.1
Fumarylacetoacetase.
     
 0.456
ALI24486.1
Hypothetical protein.
  
 
 0.452
ALI29556.1
Transcriptional regulator, TetR family.
  
     0.452
ALI24010.1
Transcriptional regulator, MarR family.
 
 
 0.445
ALI26690.1
Hypothetical protein.
  
 
 0.433
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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