STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI29197.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
ALI29198.1
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
  
 0.839
ALI29200.1
ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component.
  
    0.818
ALI29199.1
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.814
ALI24008.1
PPE family protein.
  
  
 0.729
ALI28366.1
Hypothetical protein.
  
  
 0.729
ALI29208.1
Arsenic efflux pump protein.
 
     0.552
ALI28538.1
Surface antigen, putative.
  
    0.484
rpsR
SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.480
rpsN-2
SSU ribosomal protein S14p (S29e); Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
       0.480
rpmG2
LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.
       0.480
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.