STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_1Transcriptional regulator, GntR family. (246 aa)    
Predicted Functional Partners:
ALI25027.1
Ribosylnicotinamide kinase.
   
  
 0.702
ALI29510.1
Oxidoreductase, short-chain dehydrogenase/reductase family.
       0.582
hadA
HadA; Belongs to the UPF0336 family.
     
 0.566
ALI29514.1
Putative oxidoreductase.
 
     0.551
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
   
 0.539
ALI25963.1
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.526
pdhR_2
Transcriptional regulator, GntR family.
 
  
 0.524
ALI26877.1
Transcriptional regulator, GntR family.
 
  
 0.519
lutR_7
Lactate-responsive regulator LldR in Actinobacteria, GntR family.
 
  
 0.514
ALI24565.1
Transcriptional regulator, GntR family.
 
  
 0.502
Your Current Organism:
Mycolicibacterium fortuitum
NCBI taxonomy Id: 1766
Other names: ATCC 6841, CCUG 20994, CIP 104534, DSM 46621, IFO 13159, JCM 6387, M. fortuitum, Mycobacterium fortuitum, Mycobacterium giae, Mycobacterium minetti, NBRC 13159, NCTC 10394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.