STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknF_1Serine/threonine-protein kinase PknF. (472 aa)    
Predicted Functional Partners:
pstP_2
PP2C-family Ser/Thr phosphatase.
 
 
 0.885
pstP_1
PP2C-family Ser/Thr phosphatase.
 
 0.883
ppsA_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
  
  
 0.763
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
     
 0.731
garA_2
Glycogen accumulation regulator GarA.
 
 
 
 0.716
AMO59052.1
Long-chain-fatty-acid--AMP ligase FadD32.
       0.689
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.560
garA_1
Glycogen accumulation regulator GarA.
 
 
 
 0.530
tmoS
Sensor histidine kinase TmoS.
  
 
 0.518
fhaA
FHA domain-containing protein FhaA.
 
 
 
 0.502
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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