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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO59980.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
czcO
Putative oxidoreductase CzcO.
 
   
 0.965
AMO59985.1
Hypothetical protein.
 
   
 0.965
ramA_1
(R)-stereoselective amidase.
 
   
 0.964
AMO59984.1
N-carbamoyl-D-amino acid hydrolase.
 
   
 0.956
pimA_2
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
 
   
 0.955
lipS
Lipoyl synthase, organellar chromatophore.
 
     0.955
thiL_1
Thiamine-monophosphate kinase.
 
     0.952
cobL
Precorrin-6Y C(5,15)-methyltransferase (decarboxylating).
  
  
 0.716
nasF
Uroporphyrinogen-III C-methyltransferase.
  
    0.632
cysG_2
Siroheme synthase.
  
    0.620
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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