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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icaAPoly-beta-1,6-N-acetyl-D-glucosamine synthase. (470 aa)    
Predicted Functional Partners:
crnA
Creatinine amidohydrolase.
 
  
 0.997
albA
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
 
   
 0.978
AMO60117.1
Hypothetical protein.
 
   
 0.977
betA
Oxygen-dependent choline dehydrogenase.
  
  
 0.931
tmoS
Sensor histidine kinase TmoS.
  
 
 0.881
lldD
L-lactate dehydrogenase (cytochrome).
 
  
 0.856
rutR_2
HTH-type transcriptional regulator RutR.
 
   
 0.813
AMO61020.1
Putative short-chain type dehydrogenase/reductase.
 
 
 
 0.670
AMO61115.1
Putative short-chain type dehydrogenase/reductase.
 
 
 
 0.666
AMO60106.1
Putative NAD-dependent oxidoreductase.
 
 
 
 0.663
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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