STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywrDPutative gamma-glutamyltransferase YwrD. (531 aa)    
Predicted Functional Partners:
ybdK_3
Carboxylate-amine ligase YbdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
    
 0.938
ybdK_2
Carboxylate-amine ligase YbdK.
    
 0.929
pepA
Cytosol aminopeptidase.
 
 
 0.929
gpx2
Hydroperoxy fatty acid reductase gpx2.
    
 0.922
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
 0.916
pepN_2
Aminopeptidase N.
  
 
 0.911
tpa_2
Taurine--pyruvate aminotransferase.
    
 0.908
glnA_4
Glutamine synthetase 1.
    
 0.904
gshA
Glutamate--cysteine ligase GshA.
     
  0.900
AMO59316.1
LamB/YcsF family protein.
     
 0.900
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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