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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaFL-ribulose-5-phosphate 4-epimerase UlaF. (233 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 
 0.997
araA
L-arabinose isomerase.
 
 
 0.997
xylB_2
Xylulose kinase.
 
 
 0.960
xylB_1
Xylulose kinase.
 
 
 0.952
xylB_3
Xylulose kinase.
  
 
 0.945
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.927
lacI
Lactose operon repressor.
 
   
 0.866
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
  
 0.848
ytfT
Inner membrane ABC transporter permease protein YtfT.
 
  
 0.839
rbsA_2
Ribose import ATP-binding protein RbsA.
  
  
 0.832
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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