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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO60556.1Bacterial regulatory protein, tetR family. (212 aa)    
Predicted Functional Partners:
AMO60555.1
Putative aminoglycoside phosphotransferase.
 
   
 0.853
AMO59586.1
DNA-binding transcriptional repressor AcrR.
  
  
 0.822
rutR_2
HTH-type transcriptional regulator RutR.
  
  
 0.804
AMO61482.1
Bacterial regulatory protein, tetR family.
  
   
0.789
AMO62222.1
Bacterial regulatory protein, tetR family.
  
    0.786
AMO60554.1
Hypothetical protein.
 
   
 0.781
AMO63593.1
Putative HTH-type transcriptional regulator.
  
   0.778
AMO61695.1
Helix-turn-helix domain protein.
   
  
 0.767
cobB_3
NAD-dependent protein deacylase.
  
  
 0.764
ywtF
Putative transcriptional regulator YwtF.
   
    0.761
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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