STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO60744.1Long-chain-fatty-acid--CoA ligase FadD19. (549 aa)    
Predicted Functional Partners:
kshA_4
3-ketosteroid-9-alpha-monooxygenase oxygenase subunit.
 
  
 0.848
AMO60745.1
Thioesterase superfamily protein.
       0.798
AMO59425.1
Lipid-transfer protein.
 
 
 0.784
caiD_1
Carnitinyl-CoA dehydratase.
 
 
 0.738
pksJ
Polyketide synthase PksJ.
 
0.738
AMO59424.1
acetyl-CoA acetyltransferase.
 
 
 0.731
lcfB_6
Long-chain-fatty-acid--CoA ligase.
 
     0.729
ppsA_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
  
 0.727
pks2
Phthioceranic/hydroxyphthioceranic acid synthase.
  
 0.709
eryA_3
Erythronolide synthase, modules 1 and 2.
  
 0.709
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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