STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_5Long-chain-fatty-acid--CoA ligase. (830 aa)    
Predicted Functional Partners:
fbpA
Fe(3+)-binding periplasmic protein precursor.
 
   
 0.928
potB_1
Spermidine/putrescine transport system permease protein PotB.
 
     0.923
fbpC2
Fe(3+) ions import ATP-binding protein FbpC 2.
 
  
  0.858
pksJ
Polyketide synthase PksJ.
  
0.738
ppsA_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
  
 0.727
pks2
Phthioceranic/hydroxyphthioceranic acid synthase.
  
 0.709
eryA_3
Erythronolide synthase, modules 1 and 2.
  
 0.709
eryA_1
Erythronolide synthase, modules 5 and 6.
  
 0.685
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.642
bmrU
Putative lipid kinase BmrU.
   
 0.584
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.